An operational robotic pollen monitoring network based on automatic image recognition.
Identifieur interne : 000566 ( Main/Exploration ); précédent : 000565; suivant : 000567An operational robotic pollen monitoring network based on automatic image recognition.
Auteurs : Jose Oteros [Espagne] ; Alisa Weber [Allemagne] ; Suzanne Kutzora [Allemagne] ; Jesús Rojo [Espagne] ; Stefanie Heinze [Allemagne] ; Caroline Herr [Allemagne] ; Robert Gebauer [Allemagne] ; Carsten B. Schmidt-Weber [Allemagne] ; Jeroen T M. Buters [Allemagne]Source :
- Environmental research [ 1096-0953 ] ; 2020.
Abstract
There is high demand for online, real-time and high-quality pollen data. To the moment pollen monitoring has been done manually by highly specialized experts. Here we evaluate the electronic Pollen Information Network (ePIN) comprising 8 automatic BAA500 pollen monitors in Bavaria, Germany. Automatic BAA500 and manual Hirst-type pollen traps were run simultaneously at the same locations for one pollen season. Classifications by BAA500 were checked by experts in pollen identification, which is traditionally considered to be the "gold standard" for pollen monitoring. BAA500 had a multiclass accuracy of over 90%. Correct identification of any individual pollen taxa was always >85%, except for Populus (73%) and Alnus (64%). The BAA500 was more precise than the manual method, with less discrepancies between determinations by pairs of automatic pollen monitors than between pairs of humans. The BAA500 was online for 97% of the time. There was a significant correlation of 0.84 between airborne pollen concentrations from the BAA500 and Hirst-type pollen traps. Due to the lack of calibration samples it is unknown which instrument gives the true concentration. The automatic BAA500 network delivered pollen data rapidly (3 h delay with real-time), reliably and online. We consider the ability to retrospectively check the accuracy of the reported classification essential for any automatic system.
DOI: 10.1016/j.envres.2020.110031
PubMed: 32814105
Affiliations:
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Schmidt-Weber</name><affiliation wicri:level="3"><nlm:affiliation>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich</wicri:regionArea><placeName><region type="land" nuts="1">Bavière</region><region type="district" nuts="2">District de Haute-Bavière</region><settlement type="city">Munich</settlement></placeName></affiliation></author><author><name sortKey="Buters, Jeroen T M" sort="Buters, Jeroen T M" uniqKey="Buters J" first="Jeroen T M" last="Buters">Jeroen T M. Buters</name><affiliation wicri:level="3"><nlm:affiliation>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich, Germany. Electronic address: buters@tum.de.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich</wicri:regionArea><placeName><region type="land" nuts="1">Bavière</region><region type="district" nuts="2">District de Haute-Bavière</region><settlement type="city">Munich</settlement></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:32814105</idno><idno type="pmid">32814105</idno><idno type="doi">10.1016/j.envres.2020.110031</idno><idno type="wicri:Area/Main/Corpus">000136</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000136</idno><idno type="wicri:Area/Main/Curation">000136</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000136</idno><idno type="wicri:Area/Main/Exploration">000136</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">An operational robotic pollen monitoring network based on automatic image recognition.</title><author><name sortKey="Oteros, Jose" sort="Oteros, Jose" uniqKey="Oteros J" first="Jose" last="Oteros">Jose Oteros</name><affiliation wicri:level="1"><nlm:affiliation>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich, Germany; Department of Botany, Ecology and Plant Physiology, University of Córdoba, Córdoba, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich, Germany; Department of Botany, Ecology and Plant Physiology, University of Córdoba, Córdoba</wicri:regionArea><wicri:noRegion>Córdoba</wicri:noRegion></affiliation></author><author><name sortKey="Weber, Alisa" sort="Weber, Alisa" uniqKey="Weber A" first="Alisa" last="Weber">Alisa Weber</name><affiliation wicri:level="3"><nlm:affiliation>Bayerisches Landesamt für Gesundheit und Lebensmittelsicherheit (LGL), Munich, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Bayerisches Landesamt für Gesundheit und Lebensmittelsicherheit (LGL), Munich</wicri:regionArea><placeName><region type="land" nuts="1">Bavière</region><region type="district" nuts="2">District de Haute-Bavière</region><settlement type="city">Munich</settlement></placeName></affiliation></author><author><name sortKey="Kutzora, Suzanne" sort="Kutzora, Suzanne" uniqKey="Kutzora S" first="Suzanne" last="Kutzora">Suzanne Kutzora</name><affiliation wicri:level="3"><nlm:affiliation>Bayerisches Landesamt für Gesundheit und Lebensmittelsicherheit (LGL), Munich, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Bayerisches Landesamt für Gesundheit und Lebensmittelsicherheit (LGL), Munich</wicri:regionArea><placeName><region type="land" nuts="1">Bavière</region><region type="district" nuts="2">District de Haute-Bavière</region><settlement type="city">Munich</settlement></placeName></affiliation></author><author><name sortKey="Rojo, Jesus" sort="Rojo, Jesus" uniqKey="Rojo J" first="Jesús" last="Rojo">Jesús Rojo</name><affiliation wicri:level="1"><nlm:affiliation>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich, Germany; Department of Environmental Sciences, University of Castilla La-Mancha, Toledo, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich, Germany; Department of Environmental Sciences, University of Castilla La-Mancha, Toledo</wicri:regionArea><wicri:noRegion>Toledo</wicri:noRegion></affiliation></author><author><name sortKey="Heinze, Stefanie" sort="Heinze, Stefanie" uniqKey="Heinze S" first="Stefanie" last="Heinze">Stefanie Heinze</name><affiliation wicri:level="3"><nlm:affiliation>Bayerisches Landesamt für Gesundheit und Lebensmittelsicherheit (LGL), Munich, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Bayerisches Landesamt für Gesundheit und Lebensmittelsicherheit (LGL), Munich</wicri:regionArea><placeName><region type="land" nuts="1">Bavière</region><region type="district" nuts="2">District de Haute-Bavière</region><settlement type="city">Munich</settlement></placeName></affiliation></author><author><name sortKey="Herr, Caroline" sort="Herr, Caroline" uniqKey="Herr C" first="Caroline" last="Herr">Caroline Herr</name><affiliation wicri:level="3"><nlm:affiliation>Bayerisches Landesamt für Gesundheit und Lebensmittelsicherheit (LGL), Munich, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Bayerisches Landesamt für Gesundheit und Lebensmittelsicherheit (LGL), Munich</wicri:regionArea><placeName><region type="land" nuts="1">Bavière</region><region type="district" nuts="2">District de Haute-Bavière</region><settlement type="city">Munich</settlement></placeName></affiliation></author><author><name sortKey="Gebauer, Robert" sort="Gebauer, Robert" uniqKey="Gebauer R" first="Robert" last="Gebauer">Robert Gebauer</name><affiliation wicri:level="1"><nlm:affiliation>IT Consulting Robert Gebauer, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>IT Consulting Robert Gebauer</wicri:regionArea></affiliation></author><author><name sortKey="Schmidt Weber, Carsten B" sort="Schmidt Weber, Carsten B" uniqKey="Schmidt Weber C" first="Carsten B" last="Schmidt-Weber">Carsten B. Schmidt-Weber</name><affiliation wicri:level="3"><nlm:affiliation>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich</wicri:regionArea><placeName><region type="land" nuts="1">Bavière</region><region type="district" nuts="2">District de Haute-Bavière</region><settlement type="city">Munich</settlement></placeName></affiliation></author><author><name sortKey="Buters, Jeroen T M" sort="Buters, Jeroen T M" uniqKey="Buters J" first="Jeroen T M" last="Buters">Jeroen T M. Buters</name><affiliation wicri:level="3"><nlm:affiliation>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich, Germany. Electronic address: buters@tum.de.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich</wicri:regionArea><placeName><region type="land" nuts="1">Bavière</region><region type="district" nuts="2">District de Haute-Bavière</region><settlement type="city">Munich</settlement></placeName></affiliation></author></analytic><series><title level="j">Environmental research</title><idno type="eISSN">1096-0953</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">There is high demand for online, real-time and high-quality pollen data. To the moment pollen monitoring has been done manually by highly specialized experts. Here we evaluate the electronic Pollen Information Network (ePIN) comprising 8 automatic BAA500 pollen monitors in Bavaria, Germany. Automatic BAA500 and manual Hirst-type pollen traps were run simultaneously at the same locations for one pollen season. Classifications by BAA500 were checked by experts in pollen identification, which is traditionally considered to be the "gold standard" for pollen monitoring. BAA500 had a multiclass accuracy of over 90%. Correct identification of any individual pollen taxa was always >85%, except for Populus (73%) and Alnus (64%). The BAA500 was more precise than the manual method, with less discrepancies between determinations by pairs of automatic pollen monitors than between pairs of humans. The BAA500 was online for 97% of the time. There was a significant correlation of 0.84 between airborne pollen concentrations from the BAA500 and Hirst-type pollen traps. Due to the lack of calibration samples it is unknown which instrument gives the true concentration. The automatic BAA500 network delivered pollen data rapidly (3 h delay with real-time), reliably and online. We consider the ability to retrospectively check the accuracy of the reported classification essential for any automatic system.</div></front></TEI><pubmed><MedlineCitation Status="In-Data-Review" Owner="NLM"><PMID Version="1">32814105</PMID><DateRevised><Year>2020</Year><Month>11</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1096-0953</ISSN><JournalIssue CitedMedium="Internet"><Volume>191</Volume><PubDate><Year>2020</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Environmental research</Title><ISOAbbreviation>Environ Res</ISOAbbreviation></Journal><ArticleTitle>An operational robotic pollen monitoring network based on automatic image recognition.</ArticleTitle><Pagination><MedlinePgn>110031</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0013-9351(20)30928-2</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.envres.2020.110031</ELocationID><Abstract><AbstractText>There is high demand for online, real-time and high-quality pollen data. To the moment pollen monitoring has been done manually by highly specialized experts. Here we evaluate the electronic Pollen Information Network (ePIN) comprising 8 automatic BAA500 pollen monitors in Bavaria, Germany. Automatic BAA500 and manual Hirst-type pollen traps were run simultaneously at the same locations for one pollen season. Classifications by BAA500 were checked by experts in pollen identification, which is traditionally considered to be the "gold standard" for pollen monitoring. BAA500 had a multiclass accuracy of over 90%. Correct identification of any individual pollen taxa was always >85%, except for Populus (73%) and Alnus (64%). The BAA500 was more precise than the manual method, with less discrepancies between determinations by pairs of automatic pollen monitors than between pairs of humans. The BAA500 was online for 97% of the time. There was a significant correlation of 0.84 between airborne pollen concentrations from the BAA500 and Hirst-type pollen traps. Due to the lack of calibration samples it is unknown which instrument gives the true concentration. The automatic BAA500 network delivered pollen data rapidly (3 h delay with real-time), reliably and online. We consider the ability to retrospectively check the accuracy of the reported classification essential for any automatic system.</AbstractText><CopyrightInformation>Copyright © 2020 Elsevier Inc. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Oteros</LastName><ForeName>Jose</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich, Germany; Department of Botany, Ecology and Plant Physiology, University of Córdoba, Córdoba, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Weber</LastName><ForeName>Alisa</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Bayerisches Landesamt für Gesundheit und Lebensmittelsicherheit (LGL), Munich, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kutzora</LastName><ForeName>Suzanne</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Bayerisches Landesamt für Gesundheit und Lebensmittelsicherheit (LGL), Munich, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rojo</LastName><ForeName>Jesús</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich, Germany; Department of Environmental Sciences, University of Castilla La-Mancha, Toledo, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Heinze</LastName><ForeName>Stefanie</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Bayerisches Landesamt für Gesundheit und Lebensmittelsicherheit (LGL), Munich, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Herr</LastName><ForeName>Caroline</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Bayerisches Landesamt für Gesundheit und Lebensmittelsicherheit (LGL), Munich, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gebauer</LastName><ForeName>Robert</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>IT Consulting Robert Gebauer, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schmidt-Weber</LastName><ForeName>Carsten B</ForeName><Initials>CB</Initials><AffiliationInfo><Affiliation>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Buters</LastName><ForeName>Jeroen T M</ForeName><Initials>JTM</Initials><AffiliationInfo><Affiliation>Center of Allergy & Environment (ZAUM), Member of the German Center for Lung Research (DZL), Technische Universität München/Helmholtz Center, Munich, Germany. Electronic address: buters@tum.de.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>08</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Environ Res</MedlineTA><NlmUniqueID>0147621</NlmUniqueID><ISSNLinking>0013-9351</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Aerobiology</Keyword><Keyword MajorTopicYN="N">Allergy</Keyword><Keyword MajorTopicYN="N">BAA500</Keyword><Keyword MajorTopicYN="N">Hirst</Keyword><Keyword MajorTopicYN="N">Quality control</Keyword><Keyword MajorTopicYN="N">ePIN</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>03</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2020</Year><Month>07</Month><Day>31</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>08</Month><Day>01</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>8</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>8</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>8</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32814105</ArticleId><ArticleId IdType="pii">S0013-9351(20)30928-2</ArticleId><ArticleId IdType="doi">10.1016/j.envres.2020.110031</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li><li>Espagne</li></country><region><li>Bavière</li><li>District de Haute-Bavière</li></region><settlement><li>Munich</li></settlement></list><tree><country name="Espagne"><noRegion><name sortKey="Oteros, Jose" sort="Oteros, Jose" uniqKey="Oteros J" first="Jose" last="Oteros">Jose Oteros</name></noRegion><name sortKey="Rojo, Jesus" sort="Rojo, Jesus" uniqKey="Rojo J" first="Jesús" last="Rojo">Jesús Rojo</name></country><country name="Allemagne"><region name="Bavière"><name sortKey="Weber, Alisa" sort="Weber, Alisa" uniqKey="Weber A" first="Alisa" last="Weber">Alisa Weber</name></region><name sortKey="Buters, Jeroen T M" sort="Buters, Jeroen T M" uniqKey="Buters J" first="Jeroen T M" last="Buters">Jeroen T M. Buters</name><name sortKey="Gebauer, Robert" sort="Gebauer, Robert" uniqKey="Gebauer R" first="Robert" last="Gebauer">Robert Gebauer</name><name sortKey="Heinze, Stefanie" sort="Heinze, Stefanie" uniqKey="Heinze S" first="Stefanie" last="Heinze">Stefanie Heinze</name><name sortKey="Herr, Caroline" sort="Herr, Caroline" uniqKey="Herr C" first="Caroline" last="Herr">Caroline Herr</name><name sortKey="Kutzora, Suzanne" sort="Kutzora, Suzanne" uniqKey="Kutzora S" first="Suzanne" last="Kutzora">Suzanne Kutzora</name><name sortKey="Schmidt Weber, Carsten B" sort="Schmidt Weber, Carsten B" uniqKey="Schmidt Weber C" first="Carsten B" last="Schmidt-Weber">Carsten B. Schmidt-Weber</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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